Table of Contents
How do I save a movie in PyMOL?
You can save the movie using the “mpng” command, or you can save it from the “File” menu.
How do you make scenes in PyMOL?
Simply setup each view and then when ready you can do Scene->Store from the PyMOL menus (or scene auto, store on the command line or the third method Ctrl+PgDn (Fn+Ctrl+DownArrow on the Mac)). Do this for each view you setup. Once done, you can scroll through your scenes by pushing PgUp/PgDn.
How do you rotate a movie in PyMOL?
To make a movie that simply rotates around your scene 360 degrees, in the menu click on: Movie->Program->Camera->X-Roll->N Seconds. for the Y-axis roll. Done!
How do you make a morph in PyMOL?
PyMOL now offers the morphing menu: A > Action > Generate > Morph > ……The options are to morph:
- first state to second.
- first state directly to last.
- first state to last, visiting each intervening state.
- first state to last, visiting each intervening state and then back to the first.
How do you split a state in PyMOL?
- split_states object [, first [, last [, prefix ]]]
- # example usage load fileName. pdb1, name split_states name delete name # split all the states to objects starting with conf fetch 1nmr split_states 1nmr, prefix=conf.
- load 1vls. pdb1, 1vls split_states 1vls dele 1vls.
How do you zoom in on PyMOL?
In the mouse-and-keyboard control of PyMOL, rotation and zooming of molecular objects are achieved by left-click and right-click on the mouse buttons respectively.
What is morphing in PyMOL?
From PyMOLWiki. The morph command is an incentive PyMOL feature (not available in open-source version). Given two or more conformations, either as two objects or one multi-state object, morph can create an interpolated trajectory from the first to the second conformation.
How do I zoom with touchpad on PyMOL?
PyMOL is designed to be driven using a three button “wheel” mouse….Mouse Mode: 2 Button Viewing.
| Action | Left Button Action | Right Button Action |
|---|---|---|
| click-and-drag | rotate camera | zoom (move camera along Z) |
| SHIFT-click | set pick atom 1 (pk1) | |
| SHIFT-click-and-drag | adjust clipping planes | |
| CTRL-click-and-drag | move camera in XY Plane |
How do you move an object in PyMOL?
In PyMOL, all the molecules on display can be moved by pressing the middle mouse button and dragging.
How do you separate chains in PyMOL?
All Answers (3) If you use the PyMol program, you can save each chain separately: – Go to the Displayand select Sequences to make Sequences appearing on the top of the PyMol viewer window. – Go to the Display/Sequence Mode menu, and Select Chains, to make chains references appearing in place of the sequences.
How do I zoom in and out in PyMOL?
How do you zoom in on PyMOL without a mouse?
You can also zoom out the viewing window by reverse mouse or figure controls. For example, if you want to zoom in the viewing window, place two figures on the touchpad, and spread them apart. You see the molecule structure image is enlarged, as if the viewing window is zoomed in at the center of the screen.
How do you zoom in on PyMOL Windows?
PyMOL is designed to be driven using a three button “wheel” mouse. However, an alternate two-button mode is supported….Mouse Mode: 2 Button Viewing.
| Action | Left Button Action | Right Button Action |
|---|---|---|
| click-and-drag | rotate camera | zoom (move camera along Z) |
| SHIFT-click | set pick atom 1 (pk1) |